Publications: Books

Books edited

• J. Gorman, B.Shapiro, co-editors of “Control of MEMS to Atoms”. Springer Verlag, ISBN (1441958312), 2012 edition (16 Dec 2011). Also on Amazon. [Bioengineering press release, ISR press release.]

Chapters in books

1. F.Yesilkoy, C.Ropp, Z.Cummins, R.Probst, E.Waks, B.Shapiro, M.Peckerar*, “New Applications and Emerging Technologies”, editor M.Feldman, chapter in “Nanolithograpy: The Art of Fabricating Nanoelectronic, Nanophotonic, and Nanobiologic Devices and Systems”, Woodhead Publishing LTD, Cambridge. To appear … 2012.
2. M.Armani*, Z.Cummins*, J.Gong, P.Mathai*, R.Probst*, C.Ropp, E.Waks, S.Walker*, B.Shapiro, “Feedback Control of Micro-Flows”, chapter for “Control of MEMS to Atoms”, editors J.Gorman and B.Shapiro, Springer Verlag, in-press Nov 2011, to appear Mar 2012.
3. A.Komaee*, R.Lee, A.Nacev*, R.Probst*, A.Sarwar*, I.Rutel, D.Depireux, K.Dormer, B.Shapiro, “Putting Therapeutic Nanoparticles Where They Need To Go By Magnet Systems Design and Control”, editor TK Thanh, chapter in “Magnetic Nanoparticles: From Fabrication to Biomedical and Clinical Applications”, CRC Press/Taylor & Francis, Jan, 2012.
4. M.Armani*,R.Probst*,B.Shapiro, “Fabricating Micro-Fluidic Channels Using a Vinyl Sign Plotter", chapter for “Lab on a Chip Technology: Fabrication and Microfluidics”, editors K.E.Herold, A.Rasooly, Caister Academic Press, Aug 2009.
5. B.Shapiro, “Control of Microfluidics” chapter entry for “Encyclopedia of Microfluidics and Nanofluidics”, editor D. Li. Springer Verlag, Sep 2008.

Publications: Journal Papers
Updated August 2016

2016

• L.Kangmook, C.Ropp, S.Barik, J.T.Fourkas, B.Shapiro, E.Waks, “Nanostructure-induced distortion in single-emitter microscopy”, NanoLetters, accepted Aug 2016.
• B.Ramaswamy, J.M.Algarin, I.N.Weinberg, Y.J.Chen, I.N.Krivorotov, J.A.Katine, B.Shapiro, E.Waks, “Wireless current sensing by near field induction from a spin transfer torque nano-oscillator”,  Applied Physics Letters, vol 108, pages 242403-(1-5), June 2016.

2015

• B.Ramaswamy, S.Kulkarni, P.S.Villar, R.Smith, C.Eberly, R.Araneda, D.Depireux, B.Shapiro, “Movement of Magnetic Nanoparticles in the Brain: Mechanisms and Impact on Normal Neuronal Function”, NanoMedicine vol 11, pg 1821-9, June 2015.
• S.Kulkarni, B.Ramaswamy, E.Horton, S.Gangapuram, A.Nacev, D.Depireux, M.Shimoji, B.Shapiro, "Quantifying the Motion of Magnetic Particles in Excised Tissue: Effect of Particle Properties and Applied Magnetic Field", Journal of Magnetism and Magnetic Materials (JMMM), vol 393, pg 243-252, Nov 2015.
• C.Ropp, Z.Cummins, S.Nah, J.T.Fourkas, B.Shapiro, E.Waks, "Nanoscale Probing of Image Dipole Interactions in a Metallic Nanostructure", Nature Communications, vol 6, number 6558, March 2015.
• M.A.Bevan, D.M.Ford, M.A.Grover, B.Shapiro, D.Maroudas, Y.Yang, R.Thyagarajan, X.Tang, R.M.Sehgal, "Controlling Assembly of Colloidal Particles into Structure Objects: Basic Strategy and a Case Study", J. Process Control, vol 27, pg 64-75, Jan 2015.
• K.Lim, C.Ropp, B.Shapiro, J.M.Taylor, E.Waks, "Scanning Localized Magnetic Fields in a Microfluidic Device with a Single Nitrogen Vacancy Center", NanoLetters, vol 15, pg 1481-1486, Feb 2015.

2014

• A.Nacev, I.N.Weinberg, P.Y.Stepanov, S.Kupfer, L.O.Mair, M.G.Urdaneta, M.Shimoji, S.T.Fricke, B.Shapiro, “Dynamic Inversion Enables External Magnets to Concentrate Ferromagnetic Rods to a Central Target”, NanoLetters, 2 Dec 2014. [Press release: http://www.bioe.umd.edu/media/release.php?id=358]
• B.Shapiro, S.Kulkarni, A.Nacev, S.Muro, P.Y.Stepanov, I.N.Weinberg, "Open Challenges in Magnetic Drug Targeting", WIREs Nanomedicine and Nanobiotechnology, 6 Nov 2014.
• B.Shapiro, D.Depireux, A.Sarwar, A.Nacev, D.Preciado, J.Hausfeld, "Pre-Clinical Development of Magnetic Delivery of Therapy to Middle and Inner Ears", ENT & Audiology News, vol 23, issue 1, pg 54-56, 2014.
• B.Shapiro, S.Kulkarni, A.Nacev, A.Sarwar, D.Preciado, D.Depireux, "Shaping Magnetic Fields to Direct Therapy to Ears and Eyes", Annual Reviews of Biomedical Engineering, vol 16, pg 455-81, 11 July 2014. [Invited review paper.]

2013

• M.Armani, M.Tangrea, B.Yang, A.Rosenberg, K.Ylaya, J.Morris, J.Rodriguez-Canales, J.Hanson, B.Shapiro, M.Emmert-Buck, E.Smela, S.M.Hewitt, "Multiplex Quantitative Measurement of mRNAs from Fixed Tissue Microarray Sections", Diagnostic Molecular Pathology, 30 Jan 2014.
• C.Ropp, Z.Cummins, S.Nah, S.Qin, J.J.Seog, S.B.Lee, J.T.Fourkas, B.Shapiro, E.Waks, "Fabrication of Nanoassemblies Using Flow Control", NanoLetters, issue 13, vol 8, pg 3936 - 41, July 2013.
• Z.Cummins, R.Probst, B.Shapiro, "Electrokinetic Tweezing: Three-Dimensional Manipulation of Microparticles by Real-Time Imaging and Flow Control", Lab-on-a-Chip, vol 13, pg 4040 - 6, June 2013.
• Z.Shen, K.Chen, B.Shapiro, "Measuring Low Concentrations of Fluorescent Magnetic Nanoparticles by Fluorescence Microscopy", International Journal of Optomechatronics, vol 7, pg 61-66, 2013.
• C.Ropp, Z.Cummins, S.Nah, J.T.Fourkas, B.Shapiro, E.Waks, "Nanoscale Imaging and Spontaneous Emission Control with a Single Nano-Positioned Quantum Dot", Nature Communications, vol 4, article number 1447, doi: 10.1038/ncomms2477, 5 Feb 2013
• P.Mathai, P.T.Carmichael, B.Shapiro, J.A.Liddle, "Simultaneous Positioning and Orientation of Single Nano-Objects Using Flow Control", RSC Advances, 2013, vol 3, no 8, pg 2677 - 2682, Jan 2013.
• Z.Shen, A.Nacev, A.Sarwar, R.Lee, D.Depireux, B.Shapiro, "Automated Fluorescence and Reflectance Co-Registered 3-D Tissue Imaging System", IEEE Transactions on Magnetics, vol 49, no 1, pg 279-284, Jan 2013.

2012

• A.Sarwar, R.Lee, D.Depireux, B.Shapiro, "Magnetic Injection of Nanoparticles into Rat Inner Ears at a Human Head Working Distance", IEEE Transactions on Magnetics, vol 49, no 1, pg 440-452, Jan 2013.
• J.B.Freund, B.Shapiro, "Transport of Particles by Magnetic Forces and Cellular Blood Flow in a Model Microvessel", Physics of Fluids, vol 24, pg 051904-1 - 12, published online 29 May 2012.
• A.Nacev, R.Probst, S.Kim, A.Komaee, A.Sarwar, R.Lee, D.Depireux, M.Emmert-Buck, B. Shapiro*, "Towards Control of Magnetic Fluids in Patients: Directing Therapeutic Nanoparticles to Disease Locations", IEEE Control System Magazine (CSM), vol 32, no 3, pg 32-74, June 2012. [Invited tutorial paper. With authorship and North/South labels corrected in Fig 6a]. Movies.
• R.Probst, Z.Cummins, C.Ropp, E.Waks, B.Shapiro*, "Flow Control of Small Objects On-Chip: Manipulating Live Cells, Quantum Dots, and Nano-Wires", IEEE Control System Magazine (CSM), vol 32, no 2, pg 26-53, April 2012. [Invited tutorial paper.] Movies.
• A.Komaee, B.Shapiro*, "Steering a Ferromagnetic Particle by Optimal Magnetic Feedback Control", IEEE Transactions on Control Systems Technology, vol 20, issue 4, pg 1011-1024, July 2012.
• A.Sarwar*, A.Nemirovski, B.Shapiro, “Optimal Halbach Permanent Magnet Designs for Maximally Pulling and Pushing Nanoparticles”, Journal of Magnetism and Magnetic Materials (JMMM), vol 324, issue 5, pg 742-754, March 2012.

2011

• A.Nacev*, S.H.Kim*, J.Rodriguez-Canales, M.Tangrea, B.Shapiro, M.R. Emmert-Buck “A Dynamic Magnetic Shift Method to Increase Nanoparticle Concentration in Cancer Metastases: A Feasibility Study using Simulations on Autopsy Specimens”, International Journal of Nanmedicine (IJN), vol 2011:6, pg 2907-2923, Nov 2011.
• M.Armani*, M.Tangrea, B.Shapiro, M.Emmert-Buck, E. Smela, “Quantifying mRNA Levels Across Tissue Sections with 2D-RT-qPCR”, Analytical and Bioanalytical Chemistry, vol 400, pg 3383-93, July 2011.
• R.Probst*, J.Lin*, A.Komaee*, A.Nacev*, Z.Cummins*, B.Shapiro, “Planar Steering of a Single Ferrofluid Drop by Optimal Minimum Power Dynamic Feedback Control of Four Electromagnets at a Distance”, Journal of Magnetism and Magnetic Materials (JMMM), vol 323, pp 885-896, April 2011.
• A.Nacev*, C.Beni, O.Bruno, B.Shapiro, “The Behaviors of Ferro-Magnetic Nano-Particles In and Around Blood Vessels under Applied Magnetic Fields”, Journal of Magnetism and Magnetic Materials (JMMM), vol 323, issue 6, pg 651-668, March 2011.
• R.Probst*, B.Shapiro, “Three-Dimensional Electrokinetic Tweezing: Device Design, Modeling, and Control Algorithms”, Journal of Micromechanics and Microengineering, vol 21, no 2 article-number 027004, Jan 2011
• P.Mathai*, A.Berglund, A.Liddle, B.Shapiro, “Simultaneous Positioning and Orientation of a Single Nano-Object by Flow Control”, New Journal of Physics, vol 13, pg 013027, Jan 2011.

2010

• A.Nacev*, C.Beni, O.Bruno, B.Shapiro, “Magnetic Nanoparticle Transport within Flowing Blood and into Surrounding Tissue”, Nanomedicine, vol 5, no 9, pg 1459-1466, Nov 2010.
• C.Ropp, Z.Cummins*, R.Probst*, S.Qin, J.Fourkas, B.Shapiro, E.Waks, “Positioning and Immobilization of Individual Quantum Dots with Nanoscale Precision”, NanoLetters, 10(11), pg 4673-4679, Oct 2010.
• C.Ropp, R.Probst*, Z.Cummins*, R.Kumar, A.Berglund, S.Srinivasan, E.Waks, B.Shapiro, “Manipulating Quantum Dots to Nanometer Precision by Control of Flow”. NanoLetters, 10 (7), pp 2525–2530, May 2010.
  

2009

• M.Armani*, J.Rodriguez-Canales, J.Gillespie, M.Tangrea, H.Erickson, M.R.Emmert-Buck, B.Shapiro, E.Smela "2D-PCR: A Method of Mapping DNA in Tissue Sections" Lab on a Chip, vol 9, pg 3526-3534, Dec 2009.
• S.Walker*, R.H.Nochetto, B.Shapiro “Electrowetting with Contact Line Pinning: Computational Modeling and Comparisons with Experiments” Physics of Fluids, vol 23, issue 10, article 102103, Oct 2009.
• M.E.Piyasena, R.Newby, B.Shapiro, E.Smela “Electroosmotically Driven Microfluidic Actuators”
  Sensors and Actuators B Chemical, vol 141, issue 1, pg 263-269, Aug 2009.
• B.Shapiro “Towards Dynamic Control of Magnetic Fields to Focus Magnetic Carriers to Targets Deep Inside the Body” Journal of Magnetism and Magnetic Materials (JMMM), vol 321, no 10, pg 1594-1599, May 2009. [Invited submission.]
• J.West*, T.Otero, B.Shapiro, E.Smela “Chronoamperometric Study of Conformational Relaxation in PPy(DBS)” Journal of Physical Chemistry.B, vol 113, no 5, pg 1277-1293, Jan 2009.
• X.Wang, B.Shapiro, E.Smela “Development of a Model for Charge Transport in Conjugated Polymers” Journal of Physical Chemistry. C, vol 113, no 1, pg 382-401, Jan 2009.

2007

• M. Tomizuka, L.A. Bergman, B. Shapiro, R.Shoureshi, B.F. Spencer, Jr., “Bio-Inspired Autonomous Engineered Systems” Smart Structures and Systems, vol 3, no 4, Oct 2007.
• P.Mathai*, B.Shapiro “Interconnection of Subsystem Reduced-Order Models in the Electrothermal Analysis of Large Systems” IEEE Transactions on Components and Packaging Technologies, vol 30, issue 2, pg 317 – 329, June 2007
• B.Shapiro*, E.Smela, “Bending Actuators with Maximum Curvature and Force and Zero Interfacial Stress”, Journal of Intelligent Material Systems and Structures (JIMSS), vol 18, pg 181-186, Feb 2007. [Invited for special issue.]

2006

• S.Walker, B.Shapiro "Modeling the Fluid Dynamics of Electro-Wetting On Dielectric (EWOD)"
  Journal of Microelectromechanical Systems (JMEMS), vol 15, no 4, pg 986-1000, Aug 2006.
• M.Armani, S.Chaudhary, R.Probst, B.Shapiro "Using Feedback Control of Micro-Flows to Independently Steer Multiple Particles" Journal of Microelectromechanical Systems (JMEMS), vol 15, no 4, pg 945-956, Aug 2006.
• S.Chaudhary, B.Shapiro "Arbitrary Steering of Multiple Particles Independently in an Electroosmotically Driven Microfluidic System" IEEE Transactions on Control Systems Technology, vol 14, issue 4, pg 669-680, July 2006.
• M.Christophersen, B.Shapiro, E.Smela "Characterization and Modeling of PPy Bilayer Microactuators. Part 1: Curvature" Sensors and Actuators B: Chemical, vol 115, pg 596-609, 26 June 2006.

2005

• M.Armani, S.Chaudhary, R.Probst, S.Walker, B.Shapiro "Control of Micro-Fluidic Systems: Two Examples, Results, and Challenges" International Journal of Robust and Nonlinear Control, vol 15, issue 16, pg 785-803, 10 November 2005. [Invited paper].
  
• S.Walker, B.Shapiro "A Control Method for Steering Individual Particles Inside Liquid Droplets Actuated by Electrowetting" Lab on a Chip Journal, vol 12, no 1, pg 1404 - 1407, 2005.
• B.Shapiro "Workshop on Control of Micro- and Nano-Scale Systems" IEEE Control Systems Magazine, vol 25, pg 82-88, April 2005.
• I.Treise, N.Fortner, B.Shapiro, A.Hightower "Efficient Energy Based Modeling and Experimental Validation of Liquid Filling in Planar Micro-Fluidic Components and Networks" Lab on a Chip Journal, vol 5, no 3, pg 285-297, Jan 2005.

2004

• X. Wang, E.Smela, B.Shapiro "Visualizing Ion Currents In Conjugated Polymers" Advanced Materials, vol 16, no 18 , pg 1605 - 1609, Sept. 2004.
• TW.Lin, A.Modafe, B.Shapiro*, R.Ghodssi "Characterization of Dynamic Friction in MEMS-Based Microball Bearings" IEEE Transactions on Instrumentation and Measurement, vol 53, no 3, pg 839-846, June 2004.

2003

• B.Shapiro, H.Moon, R.Garrell, C.J.Kim "Equilibrium Behavior of Sessile Drops under Surface Tension, Applied External Fields, and Material Variations" Journal of Applied Physics, vol 93, no 9, pg 5794-5811, May 2003.
• B.Shapiro  "Creating Compact Models of Complex Electronic Systems: An Overview and Suggested Use of Existing Model Reduction and Experimental System Identification Tools"
  IEEE Transactions on Components and Packaging Technologies, vol 26, no 1, pg 165-172, March 2003. [Invited paper]
• B.Shapiro, K.Willcox "Analyzing Mistuning of Bladed Disks by Symmetry and Reduced-Order Aerodynamic Modeling" Journal of Propulsion and Power, vol19, no2, pg307-311, March-April 2003.

1997-1999

• B. Shapiro "Solving for Mistuned Forced Response by Symmetry" Journal of Propulsion and Power, vol 15, no 2, pg 310-325, March-April 1999.
• B. Shapiro "Symmetry Approach to Extension of Flutter Boundaries via Mistuning"
  Journal of Propulsion and Power, vol 14, no 3, pg 354-366, May-June 1998.
• B. Shapiro, B.T. Zinn "High Frequency Nonlinear Vibrational Control" IEEE Transactions on Automatic Control, vol 42, no 1, pg 83-90, Jan 1997.

Copy of PhD Thesis (Caltech)

Passive Control of Flutter and Forced Response in Bladed Disks via Mistuning. B.Shapiro

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